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Wendell Lim
Nationality American
Alma mater Harvard University, Massachusetts Institute of Technology
Scientific career
Fields Bioengineering
Institutions University of California, San Francisco
Academic advisors Fred Richards [1]

Wendell Lim is an American biochemist who is the Byer's Distinguished Professor of Cellular and Molecular Pharmacology at the University of California, San Francisco. [2] He is the director of the UCSF Cell Design Institute. [3] He earned his A.B. in chemistry from Harvard University working with Jeremy Knowles on enzyme evolutionary optimization. He obtained his Ph.D in biochemistry and biophysics from Massachusetts Institute of Technology under the guidance of Bob Sauer using genetic and biophysical approaches to understand the role of hydrophobic core interactions in protein folding. [4] He then did his postdoctoral work with Frederic Richards at Yale University on the structure of protein interaction domains. [5] [6] Lim's work has focused on cell signaling, synthetic biology, and cell engineering, particularly in immune cells. [7]

Research career

Modular Signaling Proteins

Lim's research has focused on mechanisms of cell signaling – how cells sense their environment and process this information to make complex functional decisions. [6] He began his career studying the structure and function of modular signaling domains and scaffold proteins, but became increasingly interested in the general question of how modularity plays a role in the evolution of new signaling circuits and networks. [6]

Synthetic and Systems Biology

Lim has been a pioneer in the fields of synthetic and systems biology, asking how rewiring cellular regulatory circuits can be used to understand fundamental design principles of biological systems. He showed that signaling proteins and pathways could be functionally rewired in living cells using altered protein interaction domains, scaffold proteins, and modular allosteric interactions. [8] [9] [10] [11] He helped pioneer the use of optogenetic response modules as a way to exert control of intracellular signaling and its use in profiling how cells respond to temporal patterns of stimulation. [12] [13] [14] He has also worked on identifying common regulatory network modules that perform fundamental cellular functions such as amplification, adaptation, spatial self-organization, polarized cell movement, and temporal sensing. [15] [16] [17] [18] He has been applying these approaches to engineer and understand immune cell function as well as multicellular self-organization (synthetic development). [18] [19]

Engineering therapeutic immune cells

Lim has been a leader in the application of synthetic biology approaches to immune cell engineering and cell therapy development, advocating approaches for predictively engineering cells with precision therapeutic functions to treat cancer and other complex diseases. [20] [21] His group was the first to develop small molecule gated chimeric antigen receptors (CARs) [22] as well as the highly flexible synthetic Notch (synNotch) receptor platform for programming novel transcriptional control circuits. [23] [24] [25] His group has shown how these components can be used to design T cell circuits that achieve precision combinatorial antigen detection and killing of cancer (synNotch to CAR circuits). [24] [26] [27] His group has also engineered T cells to recognize specific target tissues, and to deliver genetically encoded therapeutic payloads to these sites. [25] In addition, Lim's group has used these synthetic receptors to design positive feedback circuits for sensing antigen density with non-linear thresholds. [28]

Lim was part of the team that invented the CRISPRi system that used modular DNA targeting of inactive Cas9 to control the transcription of specific endogenous genes. [29] He has also been engineering multicellular networks that drive specific formation of complex self-organizing tissue-like structures. [18] Lim and colleagues have advocated applying cell engineering approaches to many other complex diseases besides cancer, as well as using engineered cells as research tools for probing and perturbing cell and tissue regulatory networks. [28]

Biotech industry

Lim's work in immune cell engineering led to the founding of the early cell therapy engineering company Cell Design Labs in 2015, which was acquired by Gilead Sciences in 2017. [30]

Science education and outreach

Lim co-authored the textbook Cell Signaling with colleagues Bruce Mayer and Tony Pawson. [31] His group has also participated in the synthetic biology outreach program iGEM with San Francisco Bay Area high school students and teachers. [32] [33] He has also conducted creative projects on design thinking, [34] as well as science and cooking. [35]

Personal life

Lim is Chinese-American and grew up in Chicago, where he graduated from the University of Chicago Laboratory Schools. [36] He currently lives in San Francisco with his wife and children. Lim is an avid basketball player, surfer, and artist. [6]

Awards and service

References

  1. ^ "Fred Richards on Academic Tree".
  2. ^ "UCSF Profiles".
  3. ^ "UCSF Cell Design Institute". UCSF Cell Design Institute. Retrieved 2022-07-28.
  4. ^ "Wendell Lim". Retrieved 1 November 2012.
  5. ^ "Wendell A. Lim, Ph.D." HHMI. Retrieved 1 November 2012.
  6. ^ a b c d Sedwick, C. (17 September 2012). "Wendell Lim: Exploring the path not chosen". The Journal of Cell Biology. 198 (6): 956–957. doi: 10.1083/jcb.1986pi. PMC  3444780. PMID  22986491.
  7. ^ "Research | Lim Lab". limlab.ucsf.edu. Retrieved 2022-07-29.
  8. ^ Park, Sang-Hyun; Zarrinpar, Ali; Lim, Wendell A. (2003-02-14). "Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms". Science. 299 (5609): 1061–1064. Bibcode: 2003Sci...299.1061P. doi: 10.1126/science.1076979. ISSN  1095-9203. PMID  12511654. S2CID  1643040.
  9. ^ Dueber, John E.; Mirsky, Ethan A.; Lim, Wendell A. (June 2007). "Engineering synthetic signaling proteins with ultrasensitive input/output control". Nature Biotechnology. 25 (6): 660–662. doi: 10.1038/nbt1308. ISSN  1087-0156. PMID  17515908. S2CID  10465894.
  10. ^ Yeh, Brian J.; Rutigliano, Robert J.; Deb, Anrica; Bar-Sagi, Dafna; Lim, Wendell A. (2007-05-31). "Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors". Nature. 447 (7144): 596–600. Bibcode: 2007Natur.447..596Y. doi: 10.1038/nature05851. ISSN  1476-4687. PMID  17515921. S2CID  4393136.
  11. ^ Bashor, Caleb J.; Helman, Noah C.; Yan, Shude; Lim, Wendell A. (2008-03-14). "Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics". Science. 319 (5869): 1539–1543. Bibcode: 2008Sci...319.1539B. doi: 10.1126/science.1151153. ISSN  1095-9203. PMID  18339942. S2CID  365578.
  12. ^ Levskaya, Anselm; Weiner, Orion D.; Lim, Wendell A.; Voigt, Christopher A. (2009-10-15). "Spatiotemporal control of cell signalling using a light-switchable protein interaction". Nature. 461 (7266): 997–1001. Bibcode: 2009Natur.461..997L. doi: 10.1038/nature08446. ISSN  1476-4687. PMC  2989900. PMID  19749742.
  13. ^ Toettcher, Jared E.; Weiner, Orion D.; Lim, Wendell A. (2013-12-05). "Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module". Cell. 155 (6): 1422–1434. doi: 10.1016/j.cell.2013.11.004. ISSN  1097-4172. PMC  3925772. PMID  24315106.
  14. ^ Bugaj, Lukasz J.; O'Donoghue, Geoff P.; Lim, Wendell A. (2017-01-02). "Interrogating cellular perception and decision making with optogenetic tools". The Journal of Cell Biology. 216 (1): 25–28. doi: 10.1083/jcb.201612094. ISSN  1540-8140. PMC  5223619. PMID  28003330.
  15. ^ Ma, Wenzhe; Trusina, Ala; El-Samad, Hana; Lim, Wendell A.; Tang, Chao (2009-08-21). "Defining network topologies that can achieve biochemical adaptation". Cell. 138 (4): 760–773. doi: 10.1016/j.cell.2009.06.013. ISSN  1097-4172. PMC  3068210. PMID  19703401.
  16. ^ Gerardin, Jaline; Reddy, Nishith R.; Lim, Wendell A. (2019-09-25). "The Design Principles of Biochemical Timers: Circuits that Discriminate between Transient and Sustained Stimulation". Cell Systems. 9 (3): 297–308.e2. doi: 10.1016/j.cels.2019.07.008. ISSN  2405-4720. PMC  6763348. PMID  31521602.
  17. ^ Chau, Angela H.; Walter, Jessica M.; Gerardin, Jaline; Tang, Chao; Lim, Wendell A. (2012-10-12). "Designing synthetic regulatory networks capable of self-organizing cell polarization". Cell. 151 (2): 320–332. doi: 10.1016/j.cell.2012.08.040. ISSN  1097-4172. PMC  3498761. PMID  23039994.
  18. ^ a b c Toda, Satoshi; Blauch, Lucas R.; Tang, Sindy K. Y.; Morsut, Leonardo; Lim, Wendell A. (2018-07-13). "Programming self-organizing multicellular structures with synthetic cell-cell signaling". Science. 361 (6398): 156–162. Bibcode: 2018Sci...361..156T. doi: 10.1126/science.aat0271. ISSN  1095-9203. PMC  6492944. PMID  29853554.
  19. ^ Toda, Satoshi; McKeithan, Wesley L.; Hakkinen, Teemu J.; Lopez, Pilar; Klein, Ophir D.; Lim, Wendell A. (2020-10-16). "Engineering synthetic morphogen systems that can program multicellular patterning". Science. 370 (6514): 327–331. Bibcode: 2020Sci...370..327T. doi: 10.1126/science.abc0033. ISSN  1095-9203. PMC  7986291. PMID  33060357.
  20. ^ Lim, Wendell A. (June 2010). "Designing customized cell signalling circuits". Nature Reviews. Molecular Cell Biology. 11 (6): 393–403. doi: 10.1038/nrm2904. ISSN  1471-0080. PMC  2975372. PMID  20485291.
  21. ^ Fischbach, Michael A.; Bluestone, Jeffrey A.; Lim, Wendell A. (2013-04-03). "Cell-Based Therapeutics: The Next Pillar of Medicine". Science Translational Medicine. 5 (179): 179ps7. doi: 10.1126/scitranslmed.3005568. ISSN  1946-6234. PMC  3772767. PMID  23552369.
  22. ^ Wu, Chia-Yung; Roybal, Kole T.; Puchner, Elias M.; Onuffer, James; Lim, Wendell A. (2015-10-16). "Remote control of therapeutic T cells through a small molecule-gated chimeric receptor". Science. 350 (6258): aab4077. Bibcode: 2015Sci...350.4077W. doi: 10.1126/science.aab4077. ISSN  1095-9203. PMC  4721629. PMID  26405231.
  23. ^ Morsut, Leonardo; Roybal, Kole T.; Xiong, Xin; Gordley, Russell M.; Coyle, Scott M.; Thomson, Matthew; Lim, Wendell A. (2016-02-11). "Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors". Cell. 164 (4): 780–791. doi: 10.1016/j.cell.2016.01.012. ISSN  1097-4172. PMC  4752866. PMID  26830878.
  24. ^ a b Roybal, Kole T.; Rupp, Levi J.; Morsut, Leonardo; Walker, Whitney J.; McNally, Krista A.; Park, Jason S.; Lim, Wendell A. (2016-02-11). "Precision Tumor Recognition by T Cells With Combinatorial Antigen-Sensing Circuits". Cell. 164 (4): 770–779. doi: 10.1016/j.cell.2016.01.011. ISSN  1097-4172. PMC  4752902. PMID  26830879.
  25. ^ a b Roybal, Kole T.; Williams, Jasper Z.; Morsut, Leonardo; Rupp, Levi J.; Kolinko, Isabel; Choe, Joseph H.; Walker, Whitney J.; McNally, Krista A.; Lim, Wendell A. (2016-10-06). "Engineering T Cells with Customized Therapeutic Response Programs Using Synthetic Notch Receptors". Cell. 167 (2): 419–432.e16. doi: 10.1016/j.cell.2016.09.011. ISSN  1097-4172. PMC  5072533. PMID  27693353.
  26. ^ Williams, Jasper Z.; Allen, Greg M.; Shah, Devan; Sterin, Igal S.; Kim, Ki H.; Garcia, Vivian P.; Shavey, Gavin E.; Yu, Wei; Puig-Saus, Cristina; Tsoi, Jennifer; Ribas, Antoni (2020-11-27). "Precise T cell recognition programs designed by transcriptionally linking multiple receptors". Science. 370 (6520): 1099–1104. Bibcode: 2020Sci...370.1099W. doi: 10.1126/science.abc6270. ISSN  1095-9203. PMC  8054651. PMID  33243890.
  27. ^ Choe, Joseph H.; Watchmaker, Payal B.; Simic, Milos S.; Gilbert, Ryan D.; Li, Aileen W.; Krasnow, Nira A.; Downey, Kira M.; Yu, Wei; Carrera, Diego A.; Celli, Anna; Cho, Juhyun (2021-04-28). "SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma". Science Translational Medicine. 13 (591): eabe7378. doi: 10.1126/scitranslmed.abe7378. ISSN  1946-6242. PMC  8362330. PMID  33910979.
  28. ^ a b Elowitz, Michael; Lim, Wendell A. (December 2010). "Build life to understand it". Nature. 468 (7326): 889–890. Bibcode: 2010Natur.468..889E. doi: 10.1038/468889a. ISSN  1476-4687. PMC  3068207. PMID  21164460.
  29. ^ Qi, Lei S.; Larson, Matthew H.; Gilbert, Luke A.; Doudna, Jennifer A.; Weissman, Jonathan S.; Arkin, Adam P.; Lim, Wendell A. (2021-02-04). "Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression". Cell. 184 (3): 844. doi: 10.1016/j.cell.2021.01.019. ISSN  1097-4172. PMID  33545038. S2CID  231809613.
  30. ^ "Startup Science | UCSF Magazine". magazine.ucsf.edu. Retrieved 2022-07-29.
  31. ^ Thorner, Jeremy (2017-03-01). "Cell Signaling: Principles and Mechanisms by Wendell Lim, Bruce Mayer, and Tony Pawson". The Quarterly Review of Biology. 92 (1): 105–106. doi: 10.1086/690882. ISSN  0033-5770.
  32. ^ Tansey, Bernadette (2007-11-17). "High school biowizards break new ground in winning competition". SFGATE. Retrieved 2022-07-29.
  33. ^ Zachary, G. Pascal (2007-11-18). "English, Algebra, Phys Ed ... and Biotech". The New York Times. ISSN  0362-4331. Retrieved 2022-07-29.
  34. ^ Bernstein, Rachel (2011-10-28). "Drop that Pipette: Science by Design". Cell. 147 (3): 496–497. doi: 10.1016/j.cell.2011.10.010. ISSN  0092-8674. PMID  22036559. S2CID  13248964.
  35. ^ "UCSF Lecture Takes on the Science of Food | UC San Francisco". www.ucsf.edu. Retrieved 2022-07-29.
  36. ^ "University of Chicago Laboratory Schools: Alumni » Alumni Weekend » Rising Star Professional Achievement Award". 2014-11-11. Archived from the original on 2014-11-11. Retrieved 2022-07-29.
  37. ^ "15th CeMM Landsteiner Lecture by Wendell Lim and the 2021 Denise P. Barlow Award Ceremony". CeMM - Science is our medicine!. Retrieved 2022-07-29.
  38. ^ "Wendell Lim, selected for the 34th George Streisinger Memorial Lecture | Center for Cellular Construction". ccc.ucsf.edu. Retrieved 2022-07-29.
  39. ^ "Feodor Lynen Lecture & Medaille - Homepage der Gesellschaft für Biochemie und Molekularbiologie e.V." gbm-online.de. Retrieved 2022-07-29.
  40. ^ "NIH Director's Transformative Research Award Program - Funded Research". commonfund.nih.gov. 2013-06-27. Retrieved 2022-07-29.
  41. ^ "The Smart List 2012: 50 people who will change the world". Wired UK. ISSN  1357-0978. Retrieved 2022-07-29.
  42. ^ "Wendell A. Lim". HHMI. Retrieved 2022-07-29.
  43. ^ "The Protein Society : Protein Society Awards". www.proteinsociety.org. Retrieved 2022-07-29.
  44. ^ "Science Talent Search 1982". Society for Science. Retrieved 2022-07-29.
  45. ^ "Wendell Lim, Ph.D." www.science.org. Retrieved 2022-07-29.
  46. ^ "Editorial board: Cell". www.cell.com. Retrieved 2022-07-29.
  47. ^ "BWF Board". Burroughs Wellcome Fund. Retrieved 2022-07-29.

External links