Berkelbacteria References

Berkelbacteria
Scientific classification
Domain:	Bacteria
(unranked):	CPR group
Phylum:	"Berkelbacteria"; Wrighton et al. 2014

Berkelbacteria (formerly ACD58) is a bacterial phylum with candidate status, meaning there are no cultured representatives for this group. It is part of the Candidate Phyla Radiation.

Berkelbacteria was first reported in 2012, at which time it was classified as a divergent lineage of Parcubacteria (OD1) and referred to as ACD58.^[1] It was proposed as a phylum in 2014.^[2] Representatives of this phylum have been detected in a variety of environments, including a deep thermokarst lake in the Sasapimakwananisikw River Valley (QC, Canada),^[3] an acetate-amended alluvial aquifer adjacent to the Colorado River (CO, USA),^[2] and marine sediments from the Peru Margin seafloor.^[4]

References

^ Wrighton, Kelly C.; Thomas, Brian C.; Sharon, Itai; Miller, Christopher S.; Castelle, Cindy J.; VerBerkmoes, Nathan C.; Wilkins, Michael J.; Hettich, Robert L.; Lipton, Mary S.; Williams, Kenneth H.; Long, Philip E. (2012-09-28). "Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla". Science. 337 (6102): 1661–1665. Bibcode: 2012Sci...337.1661W. doi: 10.1126/science.1224041. ISSN 0036-8075. PMID 23019650. S2CID 10362580.
^ ^a ^b Wrighton, Kelly C.; Castelle, Cindy J.; Wilkins, Michael J.; Hug, Laura A.; Sharon, Itai; Thomas, Brian C.; Handley, Kim M.; Mullin, Sean W.; Nicora, Carrie D.; Singh, Andrea; Lipton, Mary S. (July 2014). "Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer". The ISME Journal. 8 (7): 1452–1463. doi: 10.1038/ismej.2013.249. ISSN 1751-7370. PMC 4069391. PMID 24621521.
^ Vigneron, Adrien; Cruaud, Perrine; Langlois, Valérie; Lovejoy, Connie; Culley, Alexander I.; Vincent, Warwick F. (2020). "Ultra-small and abundant: Candidate phyla radiation bacteria are potential catalysts of carbon transformation in a thermokarst lake ecosystem". Limnology and Oceanography Letters. 5 (2): 212–220. doi: 10.1002/lol2.10132. ISSN 2378-2242.
^ Orsi, William D.; Richards, Thomas A.; Francis, Warren R. (January 2018). "Predicted microbial secretomes and their target substrates in marine sediment". Nature Microbiology. 3 (1): 32–37. doi: 10.1038/s41564-017-0047-9. ISSN 2058-5276. PMID 29062087. S2CID 3355333.

[1] Wrighton, Kelly C.; Thomas, Brian C.; Sharon, Itai; Miller, Christopher S.; Castelle, Cindy J.; VerBerkmoes, Nathan C.; Wilkins, Michael J.; Hettich, Robert L.; Lipton, Mary S.; Williams, Kenneth H.; Long, Philip E. (2012-09-28). "Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla". Science. 337 (6102): 1661–1665. Bibcode: 2012Sci...337.1661W. doi: 10.1126/science.1224041. ISSN 0036-8075. PMID 23019650. S2CID 10362580.

[:0-2] Wrighton, Kelly C.; Castelle, Cindy J.; Wilkins, Michael J.; Hug, Laura A.; Sharon, Itai; Thomas, Brian C.; Handley, Kim M.; Mullin, Sean W.; Nicora, Carrie D.; Singh, Andrea; Lipton, Mary S. (July 2014). "Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer". The ISME Journal. 8 (7): 1452–1463. doi: 10.1038/ismej.2013.249. ISSN 1751-7370. PMC 4069391. PMID 24621521.

[3] Vigneron, Adrien; Cruaud, Perrine; Langlois, Valérie; Lovejoy, Connie; Culley, Alexander I.; Vincent, Warwick F. (2020). "Ultra-small and abundant: Candidate phyla radiation bacteria are potential catalysts of carbon transformation in a thermokarst lake ecosystem". Limnology and Oceanography Letters. 5 (2): 212–220. doi: 10.1002/lol2.10132. ISSN 2378-2242.

[4] Orsi, William D.; Richards, Thomas A.; Francis, Warren R. (January 2018). "Predicted microbial secretomes and their target substrates in marine sediment". Nature Microbiology. 3 (1): 32–37. doi: 10.1038/s41564-017-0047-9. ISSN 2058-5276. PMID 29062087. S2CID 3355333.

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