From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
Regulator of nonsense transcripts 2 is a
protein that in humans is encoded by the UPF2
gene .
[5]
[6]
[7]
Function
This gene encodes a protein that is part of a post-splicing multiprotein complex, the
exon junction complex , involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein is located in the perinuclear area. It interacts with translation release factors and the proteins that are functional homologs of yeast Upf1p and Upf3p. Two splice variants have been found for this gene; both variants encode the same protein.
[7] UPF2 has recently been shown to alter adult behavior via alterations in hippocampal synaptic spine density and the late long-term potentiation of neurons.
[8]
Interactions
UPF2 has been shown to
interact with
UPF1 ,
[5]
[9]
[10]
[11]
[12]
UPF3A
[9]
[12] and
UPF3B .
[9]
[12]
[13]
[14]
References
^
a
b
c
GRCh38: Ensembl release 89: ENSG00000151461 –
Ensembl , May 2017
^
a
b
c
GRCm38: Ensembl release 89: ENSMUSG00000043241 –
Ensembl , May 2017
^
"Human PubMed Reference:" . National Center for Biotechnology Information, U.S. National Library of Medicine .
^
"Mouse PubMed Reference:" . National Center for Biotechnology Information, U.S. National Library of Medicine .
^
a
b Mendell JT, Medghalchi SM, Lake RG, Noensie EN, Dietz HC (Dec 2000).
"Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes" . Molecular and Cellular Biology . 20 (23): 8944–57.
doi :
10.1128/MCB.20.23.8944-8957.2000 .
PMC
86549 .
PMID
11073994 .
^ Serin G, Gersappe A, Black JD, Aronoff R, Maquat LE (Jan 2001).
"Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)" . Molecular and Cellular Biology . 21 (1): 209–23.
doi :
10.1128/MCB.21.1.209-223.2001 .
PMC
88795 .
PMID
11113196 .
^
a
b
"Entrez Gene: UPF2 UPF2 regulator of nonsense transcripts homolog (yeast)" .
^ Notaras M, Allen M, Longo F, Volk N, Toth M, Li Jeon N, Klann E, Colak D (2019-10-21).
"UPF2 leads to degradation of dendritically targeted mRNAs to regulate synaptic plasticity and cognitive function" . Molecular Psychiatry . 25 (12): 3360–3379.
doi :
10.1038/s41380-019-0547-5 .
ISSN
1476-5578 .
PMC
7566522 .
PMID
31636381 .
S2CID
204812259 .
^
a
b
c Lejeune F, Li X, Maquat LE (Sep 2003).
"Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities" . Molecular Cell . 12 (3): 675–87.
doi :
10.1016/S1097-2765(03)00349-6 .
PMID
14527413 .
^ Schell T, Köcher T, Wilm M, Seraphin B, Kulozik AE, Hentze MW (Aug 2003).
"Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells" . The Biochemical Journal . 373 (Pt 3): 775–83.
doi :
10.1042/BJ20021920 .
PMC
1223536 .
PMID
12723973 .
^ Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S (Sep 2001).
"Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay" . Genes & Development . 15 (17): 2215–28.
doi :
10.1101/gad.913001 .
PMC
312771 .
PMID
11544179 .
^
a
b
c Lykke-Andersen J, Shu MD, Steitz JA (Dec 2000).
"Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon" . Cell . 103 (7): 1121–31.
doi :
10.1016/S0092-8674(00)00214-2 .
PMID
11163187 .
S2CID
18417600 .
^ Lehner B, Sanderson CM (Jul 2004).
"A protein interaction framework for human mRNA degradation" . Genome Research . 14 (7): 1315–23.
doi :
10.1101/gr.2122004 .
PMC
442147 .
PMID
15231747 .
^ Lykke-Andersen J (Dec 2002).
"Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay" . Molecular and Cellular Biology . 22 (23): 8114–21.
doi :
10.1128/MCB.22.23.8114-8121.2002 .
PMC
134073 .
PMID
12417715 .
Further reading
Wilson KF, Fortes P, Singh US, Ohno M, Mattaj IW, Cerione RA (Feb 1999).
"The nuclear cap-binding complex is a novel target of growth factor receptor-coupled signal transduction" . The Journal of Biological Chemistry . 274 (7): 4166–73.
doi :
10.1074/jbc.274.7.4166 .
PMID
9933612 .
Nagase T, Kikuno R, Ishikawa KI, Hirosawa M, Ohara O (Feb 2000).
"Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro" . DNA Research . 7 (1): 65–73.
doi :
10.1093/dnares/7.1.65 .
PMID
10718198 .
Lykke-Andersen J, Shu MD, Steitz JA (Dec 2000).
"Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon" . Cell . 103 (7): 1121–31.
doi :
10.1016/S0092-8674(00)00214-2 .
PMID
11163187 .
S2CID
18417600 .
Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S (Sep 2001).
"Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay" . Genes & Development . 15 (17): 2215–28.
doi :
10.1101/gad.913001 .
PMC
312771 .
PMID
11544179 .
Lykke-Andersen J, Shu MD, Steitz JA (Sep 2001). "Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1". Science . 293 (5536): 1836–9.
Bibcode :
2001Sci...293.1836L .
doi :
10.1126/science.1062786 .
PMID
11546874 .
S2CID
389385 .
Lejeune F, Ishigaki Y, Li X, Maquat LE (Jul 2002).
"The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling" . The EMBO Journal . 21 (13): 3536–45.
doi :
10.1093/emboj/cdf345 .
PMC
126094 .
PMID
12093754 .
Lykke-Andersen J (Dec 2002).
"Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay" . Molecular and Cellular Biology . 22 (23): 8114–21.
doi :
10.1128/MCB.22.23.8114-8121.2002 .
PMC
134073 .
PMID
12417715 .
Chiu SY, Serin G, Ohara O, Maquat LE (Jan 2003).
"Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1" . RNA . 9 (1): 77–87.
doi :
10.1261/rna.2137903 .
PMC
1370372 .
PMID
12554878 .
Gehring NH, Neu-Yilik G, Schell T, Hentze MW, Kulozik AE (Apr 2003).
"Y14 and hUpf3b form an NMD-activating complex" . Molecular Cell . 11 (4): 939–49.
doi :
10.1016/S1097-2765(03)00142-4 .
PMID
12718880 .
Schell T, Köcher T, Wilm M, Seraphin B, Kulozik AE, Hentze MW (Aug 2003).
"Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells" . The Biochemical Journal . 373 (Pt 3): 775–83.
doi :
10.1042/BJ20021920 .
PMC
1223536 .
PMID
12723973 .
Lejeune F, Li X, Maquat LE (Sep 2003).
"Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities" . Molecular Cell . 12 (3): 675–87.
doi :
10.1016/S1097-2765(03)00349-6 .
PMID
14527413 .
Ohnishi T, Yamashita A, Kashima I, Schell T, Anders KR, Grimson A, Hachiya T, Hentze MW, Anderson P, Ohno S (Nov 2003).
"Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7" . Molecular Cell . 12 (5): 1187–200.
doi :
10.1016/S1097-2765(03)00443-X .
PMID
14636577 .
Kadlec J, Izaurralde E, Cusack S (Apr 2004). "The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3". Nature Structural & Molecular Biology . 11 (4): 330–7.
doi :
10.1038/nsmb741 .
PMID
15004547 .
S2CID
23042477 .
Lehner B, Sanderson CM (Jul 2004).
"A protein interaction framework for human mRNA degradation" . Genome Research . 14 (7): 1315–23.
doi :
10.1101/gr.2122004 .
PMC
442147 .
PMID
15231747 .
Lejeune F, Ranganathan AC, Maquat LE (Oct 2004). "eIF4G is required for the pioneer round of translation in mammalian cells". Nature Structural & Molecular Biology . 11 (10): 992–1000.
doi :
10.1038/nsmb824 .
PMID
15361857 .
S2CID
3093989 .