From Wikipedia, the free encyclopedia
This template contains a phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species in the combined phylogenomic and supermatrix analysis by Zheng & Wiens (2016))
[1] .
The template optionally uses {{
clade transclude }} as a wrapper that allows partial transclusion of parts of the phylogenetic tree selected by |label=
or |subtree=
.
Full phylogenetic tree
Partial transclusion of groups
A simple example:
{{ Phylogeny/Squamata | label = Toxicofera| wrap = }}
Note that the above has three hidden clades that can be expanded and collapsed. The interactive elements can be eliminated with the parameter |nohidden=
, as shown in the following example:
{{ Phylogeny/Squamata | label = Gekkota| wrap = | nohidden = }}
The above examples used parameter |wrap=
to add an outer clade and label, which defaults to the name of the label or subtree selected. Omitting |wrap=
allows a custom cladogram to be build around the selection from the template.
.
{{ clade | style = background-color:#eeeeff;
| label1 = [[ Laterata ]]
| 1 = {{ Phylogeny/Squamata | label = LATERATA| nohidden = }}
}}
References
Some useful references:
Zheng & Wiens (2016))
[1]
Pyron et al (2013)
[2]
Vidal & Hedges (2009)
[3]
Reptile Database: Higher Taxa in Extant Reptiles
[4]
Reeder et al (2015).
[5]
Hedges 2014 (skinks)
[6]
Fry al al (2006) (evolution of venom)
[7]
Snakes
Figueroa et al (2016)
[8]
Reynolds et al (2014) (boas and pythons)
[9]
Zaher et al (2019) (advanced caenophidian snakes)
[10]
^
a
b Zheng, Yuchi; Wiens, John J. (2016).
"Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species" . Molecular Phylogenetics and Evolution . 94 (Pt B): 537–547.
doi :
10.1016/j.ympev.2015.10.009 .
PMID
26475614 .
^ Pyron, R; Burbrink, Frank T; Wiens, John J (2013).
"A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes" . BMC Evolutionary Biology . 13 (1): 93.
Bibcode :
2013BMCEE..13...93P .
doi :
10.1186/1471-2148-13-93 .
ISSN
1471-2148 .
PMC
3682911 .
PMID
23627680 .
^ Vidal, N; Hedges, SB (2009).
"The molecular evolutionary tree of lizards, snakes, and amphisbaenians" . Comptes Rendus Biologies . 332 (2–3): 129–39.
doi :
10.1016/j.crvi.2008.07.010 .
PMID
19281946 .
S2CID
23137302 .
^ Uetz, P.; Freed, P.; Hošek, J. (eds.).
"Higher Taxa in Extant Reptiles" .
The Reptile Database . Retrieved 12 October 2019 .
^ Reeder, Tod W.; Townsend, Ted M.; Mulcahy, Daniel G.; Noonan, Brice P.; Wood, Perry L.; Sites, Jack W.; Wiens, John J. (2015).
"Integrated Analyses Resolve Conflicts over Squamate Reptile Phylogeny and Reveal Unexpected Placements for Fossil Taxa" . PLOS ONE . 10 (3): e0118199.
Bibcode :
2015PLoSO..1018199R .
doi :
10.1371/journal.pone.0118199 .
PMC
4372529 .
PMID
25803280 .
^ Hedges, SB (2014). "The high-level classification of skinks (Reptilia, Squamata, Scincomorpha)". Zootaxa . 3765 (4): 317–338.
doi :
10.11646/zootaxa.3765.4.2 .
PMID
24870904 .
^ Fry, Brian G.; et al. (February 2006).
"Early evolution of the venom system in lizards and snakes" (PDF) . Nature . 439 (7076): 584–588.
Bibcode :
2006Natur.439..584F .
doi :
10.1038/nature04328 .
PMID
16292255 .
S2CID
4386245 .
^ Figueroa, Alex; McKelvy, Alexander D.; Grismer, L. Lee; Bell, Charles D.; Lailvaux, Simon P. (2016). Parmakelis, Aristeidis (ed.).
"A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus" . PLOS ONE . 11 (9): e0161070.
Bibcode :
2016PLoSO..1161070F .
doi :
10.1371/journal.pone.0161070 .
ISSN
1932-6203 .
PMC
5014348 .
PMID
27603205 .
^ R. Graham Reynolds; Matthew L. Niemiller; Liam J. Revell (2014). "Toward a Tree-of-Life for the boas and pythons: Multilocus species-level phylogeny with unprecedented taxon sampling". Molecular Phylogenetics and Evolution . 71 : 201–213.
doi :
10.1016/j.ympev.2013.11.011 .
PMID
24315866 .
^ Zaher, Hussam; Murphy, Robert W.; Arredondo, Juan Camilo; Graboski, Roberta; Machado-Filho, Paulo Roberto; Mahlow, Kristin; Montingelli, Giovanna G.; Quadros, Ana Bottallo; Orlov, Nikolai L.; Wilkinson, Mark; Zhang, Ya-Ping; Grazziotin, Felipe G. (2019). Joger, Ulrich (ed.).
"Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)" . PLOS ONE . 14 (5): e0216148.
Bibcode :
2019PLoSO..1416148Z .
doi :
10.1371/journal.pone.0216148 .
ISSN
1932-6203 .
PMC
6512042 .
PMID
31075128 .