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Description | microRNA- mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. |
Contact | |
Research center | Sun Yat-sen University |
Laboratory | Key Laboratory of Gene Engineering of the Ministry of Education |
Authors | Jian-Hua Yang |
Primary citation | Yang & al. (2011) [1] |
Release date | 2010 |
Access | |
Website | http://starbase.sysu.edu.cn/ |
StarBase [2] is a database for decoding miRNA- mRNA, miRNA-lncRNA, [3] miRNA- sncRNA, miRNA-circRNA, [3] miRNA- pseudogene, protein-lncRNA, [4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks [5] from CLIP-Seq ( HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data. [1] [6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA [7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.