Sonic hedgehog protein (SHH) is encoded for by the SHHgene.[5] The protein is named after the video game character
Sonic the Hedgehog.
This signaling molecule is key in regulating embryonic
morphogenesis in all animals. SHH controls
organogenesis and the organization of the central nervous system, limbs, digits and many other parts of the body. Sonic hedgehog is a
morphogen that patterns the developing embryo using a concentration gradient characterized by the
French flag model.[6] This model has a non-uniform distribution of SHH molecules which governs different
cell fates according to concentration. Mutations in this gene can cause
holoprosencephaly, a failure of splitting in the cerebral hemispheres,[7] as demonstrated in an experiment using SHH knock-out mice in which the forebrain midline failed to develop and instead only a single fused telencephalic vesicle resulted.[8]
Sonic hedgehog still plays a role in differentiation, proliferation, and maintenance of adult tissues. Abnormal activation of SHH signaling in adult tissues has been implicated in various types of
cancers including
breast,
skin,
brain,
liver,
gallbladder and many more.[9]
Two of these genes, desert hedgehog and Indian hedgehog, were named for species of hedgehogs, while sonic hedgehog was named after the video game character
Sonic the Hedgehog.[15][16] The gene was named by Robert Riddle, a postdoctoral fellow at the
Tabin Lab, after his wife Betsy Wilder came home with a magazine containing an advert for the game Sonic the Hedgehog.[17][18][19] In the
zebrafish, two of the three vertebrate hh genes are duplicated: SHH a[20] and SHH b[21] (formerly described as tiggywinkle hedgehog, named for
Mrs. Tiggy-Winkle, a character from
Beatrix Potter's books for children) and ihha and ihhb[22] (formerly described as echidna hedgehog, named for the
spiny anteater and not for the character
Knuckles the Echidna in the Sonic franchise).
Sonic hedgehog has also been shown to act as an
axonal guidance cue. It has been demonstrated that SHH attracts
commissuralaxons at the ventral midline of the developing spinal cord.[34] Specifically, SHH attracts
retinal ganglion cell (RGC) axons at low concentrations and repels them at higher concentrations.[35] The absence (non-expression) of SHH has been shown to control the growth of nascent hind limbs in
cetaceans[36] (
whales and
dolphins).
The SHH gene is a member of the hedgehog gene family with five variations of DNA sequence alterations or splice variants.[37]SHH is located on chromosome seven and initiates the production of Sonic Hedgehog protein.[37] This protein sends short- and long-range signals to embryonic tissues to regulate development.[38] If the SHH gene is mutated or absent, the protein Sonic Hedgehog cannot do its job properly. Sonic hedgehog contributes to cell growth, cell specification and formation, structuring and organization of the body plan.[39] This protein functions as a vital morphogenic signaling molecule and plays an important role in the formation of many different structures in developing embryos.[39] The SHH gene affects several major organ systems, such as the nervous system, cardiovascular system, respiratory system and musculoskeletal system.[37][38] Mutations in the SHH gene can cause malformation of components of these systems, which can result in major problems in the developing embryo. The brain and eyes, for example, can be significantly impacted by mutations in this gene and cause disorders such as
Microphthalmia and
Holoprosencephaly.[39] Microphthalmia is a condition that affects the eyes, which results in small, underdeveloped tissues in one or both eyes.[39] This can lead to issues ranging from a coloboma to a single small eye to the absence of eyes altogether.[38] Holoprosencephaly is a condition most commonly caused by a mutation of the SHH gene that causes improper separation or
turn of the left and right brain[40] and facial dysmorphia.[38][39] Many systems and structures rely heavily on proper expression of the SHH gene and subsequent sonic hedgehog protein, earning it the distinction of being an essential gene to development.
Patterning of the central nervous system
The sonic hedgehog (SHH) signaling molecule assumes various roles in patterning the
central nervous system (CNS) during
vertebratedevelopment. One of the most characterized functions of SHH is its role in the induction of the
floor plate and diverse ventral cell types within the
neural tube.[41] The
notochord—a structure derived from the axial
mesoderm—produces SHH, which travels extracellularly to the ventral region of the neural tube and instructs those cells to form the floor plate.[42] Another view of floor plate induction hypothesizes that some precursor cells located in the notochord are inserted into the neural plate before its formation, later giving rise to the floor plate.[43]
The
neural tube itself is the initial groundwork of the
vertebrate CNS, and the
floor plate is a specialized structure, located at the ventral midpoint of the neural tube. Evidence supporting the notochord as the signaling center comes from studies in which a second notochord is implanted near a neural tube in vivo, leading to the formation of an ectopic floor plate within the neural tube.[44]
SHH and BMP gradients in the vertebrate neural tube
Ectopic floor plate formation
Ventral neural domains in neural tube
Sonic hedgehog is the
secreted protein that mediates signaling activities of the notochord and floor plate.[45] Studies involving
ectopic expression of SHH in vitro[46] and in vivo[47] result in floor plate induction and
differentiation of
motor neuron and ventral
interneurons. On the other hand, mice mutants for SHH lack ventral spinal cord characteristics.[48]In vitro blocking of SHH signaling using
antibodies against it shows similar phenotypes.[47] SHH exerts its effects in a concentration-dependent manner,[49] so that a high concentration of SHH results in a local
inhibition of
cellular proliferation.[50] This inhibition causes the floor plate to become thin compared to the lateral regions of the
neural tube. Lower concentration of SHH results in cellular proliferation and induction of various ventral neural cell types.[47] Once the
floor plate is established, cells residing in this region will subsequently express SHH themselves,[50] generating a
concentration gradient within the neural tube.
Although there is no direct evidence of a SHH
gradient, there is indirect evidence via the visualization of
Patched (Ptc) gene expression, which encodes for the
ligand binding domain of the
SHH receptor[51] throughout the ventral neural tube.[52]In vitro studies show that incremental two- and threefold changes in SHH concentration give rise to motor neuron and different interneuronal subtypes as found in the ventral spinal cord.[53] These incremental changes in vitro correspond to the distance of
domains from the signaling tissue (notochord and floor plate) which subsequently differentiates into different neuronal subtypes as it occurs in vitro.[54] Graded SHH signaling is suggested to be mediated through the
Gli family of proteins, which are vertebrate homologues of the Drosophilazinc-finger-containing
transcription factorCubitus interruptus (Ci). Ci is a crucial mediator of hedgehog (Hh) signaling in Drosophila.[55] In vertebrates, three different Gli proteins are present, viz.
Gli1,
Gli2 and
Gli3, which are expressed in the neural tube.[56] Mice mutants for Gli1 show normal spinal cord development, suggesting that it is dispensable for mediating SHH activity.[57] However, Gli2 mutant mice show abnormalities in the ventral spinal cord, with severe defects in the floor plate and ventral-most interneurons (V3).[58] Gli3
antagonizes SHH function in a
dose-dependent manner, promoting dorsal neuronal subtypes. SHH mutant phenotypes can be rescued in a SHH/Gli3 double
mutant.[59] Gli proteins have a C-terminal activation domain and an N-terminal repressive domain.[56][60]
SHH is suggested to promote the activation function of Gli2 and inhibit repressive activity of Gli3. SHH also seems to promote the activation function of Gli3, but this activity is not strong enough.[59] The graded concentration of SHH gives rise to graded activity of Gli 2 and Gli3, which promote ventral and dorsal neuronal subtypes in the ventral spinal cord. Evidence from Gli3 and SHH/Gli3 mutants show that SHH primarily regulates the spatial restriction of
progenitor domains rather than being inductive, as SHH/Gli3 mutants show intermixing of cell types.[59][61]
SHH also induces other proteins with which it interacts, and these interactions can influence the sensitivity of a cell towards SHH. Hedgehog-interacting protein (
HHIP) is induced by SHH, which in turn attenuates its signaling activity.[62]Vitronectin is another protein that is induced by SHH; it acts as an obligate co-factor for SHH signaling in the neural tube.[63]
There are five distinct progenitor domains in the ventral neural tube:
V3interneurons, motor neurons (MN),
V2,
V1, and V0 interneurons (in ventral to dorsal order).[53] These different progenitor domains are established by "communication" between different classes of
homeoboxtranscription factors. (See
Trigeminal Nerve.) These
transcription factors respond to SHH gradient concentration. Depending upon the nature of their interaction with SHH, they are classified into two groups—class I and class II—and are composed of members from the
Pax,
Nkx,
Dbx and
Irx families.[50] Class I proteins are repressed at different thresholds of SHH delineating ventral boundaries of
progenitor domains, while class II proteins are activated at different thresholds of SHH delineating the dorsal limit of domains. Selective cross-
repressive interactions between class I and class II proteins give rise to five cardinal ventral neuronal subtypes.[64]
It is important to note that SHH is not the only
signaling molecule exerting an effect on the developing neural tube. Many other molecules,
pathways and mechanisms are active (e.g.,
RA,
FGF,
BMP), and complex interactions between SHH and other molecules are possible. BMPs are suggested to play a critical role in determining the sensitivity of neural cell to SHH signaling. Evidence supporting this comes from studies using BMP inhibitors that ventralize the fate of the neural plate cell for a given SHH concentration.[65] On the other hand, mutation in BMP antagonists (e.g.,
noggin) produces severe defects in the ventral-most characteristics of the spinal cord, followed by
ectopic expression of BMP in the ventral neural tube.[66] Interactions of SHH with Fgf and RA have not yet been studied in molecular detail.
Morphogenetic activity
The concentration- and time-dependent, cell-fate-determining activity of SHH in the
ventralneural tube makes it a prime example of a
morphogen. In vertebrates, SHH signaling in the ventral portion of the neural tube is most notably responsible for the induction of
floor plate cells and
motor neurons.[67] SHH emanates from the
notochord and ventral floor plate of the developing neural tube to create a
concentration gradient that spans the dorso-ventral axis and is antagonized by an inverse
Wnt gradient, which specifies the dorsal spinal cord.[68][69] Higher concentrations of the SHH ligand are found in the most ventral aspects of the neural tube and notochord, while lower concentrations are found in the more dorsal regions of the neural tube.[68] The SHH concentration gradient has been visualized in the neural tube of mice engineered to express a SHH::GFP fusion protein to show this graded distribution of SHH during the time of ventral neural tube patterning.[70]
It is thought that the SHH gradient works to elicit multiple different cell fates by a concentration- and time-dependent mechanism that induces a variety of transcription factors in the ventral
progenitor cells.[68][70] Each of the ventral progenitor domains expresses a highly individualized combination of transcription factors—Nkx2.2, Olig2, Nkx6.1, Nkx6.2, Dbx1, Dbx2, Irx3, Pax6, and Pax7—that is regulated by the SHH gradient. These transcription factors are induced sequentially along the SHH concentration gradient with respect to the amount and time of exposure to SHH ligand.[68] As each population of progenitor cells responds to the different levels of SHH protein, they begin to express a unique combination of transcription factors that leads to neuronal cell fate differentiation. This SHH-induced differential gene expression creates sharp boundaries between the discrete
domains of transcription factor expression, which ultimately patterns the ventral neural tube.[68]
The spatial and temporal aspect of the progressive induction of genes and cell fates in the ventral neural tube is illustrated by the expression domains of two of the most well-characterized transcription factors, Olig2 and Nkx2.2.[68] Early in development, the cells at the ventral midline have only been exposed to a low concentration of SHH for a relatively short time and express the transcription factor Olig2.[68] The expression of Olig2 rapidly expands in a dorsal direction concomitantly with the continuous dorsal extension of the SHH gradient over time.[68] However, as the morphogenetic front of SHH ligand moves and begins to grow more concentrated, cells that are exposed to higher levels of the ligand respond by switching off Olig2 and turning on Nkx2.2,[68] creating a sharp boundary between the cells expressing the transcription factor Nkx2.2 ventral to the cells expressing Olig2. It is in this way that each of the domains of the six progenitor cell populations are thought to be successively patterned throughout the neural tube by the SHH concentration gradient.[68] Mutual inhibition between pairs of transcription factors expressed in neighboring domains contributes to the development of sharp boundaries; however, in some cases, inhibitory relationship has been found even between pairs of transcription factors from more distant domains. Particularly,
NKX2-2 expressed in the V3 domain is reported to inhibit
IRX3 expressed in V2 and more dorsal domains, although V3 and V2 are separated by a further domain termed MN.[71]
SHH expression in the frontonasal ectodermal zone (FEZ), which is a signaling center that is responsible for the patterned development of the upper jaw, regulates craniofacial development mediating through the miR-199 family in the FEZ. Specifically, SHH-dependent signals from the brain regulate genes of the miR-199 family with downregulations of the miR-199 genes increasing SHH expression and resulting in wider faces, while upregulations of the miR-199 genes decrease SHH expression resulting in narrow faces.[72]
Tooth development
SHH plays an important role in organogenesis and, most importantly, craniofacial development. Being that SHH is a signaling molecule, it primarily works by diffusion along a concentration gradient, affecting cells in different manners. In early tooth development, SHH is released from the primary
enamel knot—a signaling center—to provide positional information in both a lateral and planar signaling pattern in tooth development and regulation of tooth cusp growth.[73] SHH in particular is needed for growth of epithelial cervical loops, where the outer and inner epitheliums join and form a reservoir for dental stem cells. After the primary enamel knots are apoptosed, the secondary enamel knots are formed. The secondary enamel knots secrete SHH in combination with other signaling molecules to thicken the oral ectoderm and begin patterning the complex shapes of the crown of a tooth during differentiation and mineralization.[74] In a knockout gene model, absence of SHH is indicative of
holoprosencephaly. However, SHH activates downstream molecules of Gli2 and Gli3. Mutant Gli2 and Gli3 embryos have abnormal development of incisors that are arrested in early tooth development as well as small molars.[75]
Lung development
Although SHH is most commonly associated with brain and limb digit development, it is also important in lung development.[76][77][78][79] Studies using qPCR and knockouts have demonstrated that SHH contributes to embryonic lung development. The mammalian lung branching occurs in the epithelium of the developing
bronchi and lungs.[80][81] SHH expressed throughout the foregut
endoderm (innermost of three germ layers) in the distal epithelium, where the embryonic lungs are developing.[78][81] This suggests that SHH is partially responsible for the branching of the lungs. Further evidence of SHH's role in lung branching has been seen with qPCR. SHH expression occurs in the developing lungs around embryonic day 11 and is strongly expressed in the buds of the fetal lungs but low in the developing bronchi.[78][81] Mice who are deficient in SHH can develop tracheoesophageal fistula (abnormal connection of the esophagus and trachea).[82][78] Additionally, a double (SHH-/- ) knockout mouse model exhibited poor lung development. The lungs of the SHH double knockout failed to undergo lobation and branching (i.e., the abnormal lungs only developed one branch, compared to an extensively branched phenotype of the wildtype).[78]
Potential regenerative function
Sonic hedgehog may play a role in mammalian
hair cellregeneration. By modulating
retinoblastoma protein activity in rat cochlea, sonic hedgehog allows mature
hair cells that normally cannot return to a proliferative state to divide and differentiate.
Retinoblastoma proteins suppress cell growth by preventing cells from returning to the
cell cycle, thereby preventing proliferation. Inhibiting the activity of Rb seems to allow cells to divide. Therefore, sonic hedgehog—identified as an important regulator of Rb—may also prove to be an important feature in regrowing hair cells after damage.[83]
SHH is important for regulating dermal adipogenesis by hair follicle transit-amplifying cells (HF-TACs). Specifically, SHH induces dermal angiogenesis by acting directly on adipocyte precursors and promoting their proliferation through their expression of the peroxisome proliferator-activated receptor γ (Pparg) gene.[84]
Processing
SHH undergoes a series of processing steps before it is secreted from the cell. Newly synthesised SHH weighs 45
kDa and is referred to as the preproprotein. As a secreted protein, it contains a short
signal sequence at its N-terminus, which is recognised by the
signal recognition particle during the translocation into the
endoplasmic reticulum (ER), the first step in protein
secretion. Once translocation is complete, the signal sequence is removed by
signal peptidase in the ER. There, SHH undergoes autoprocessing to generate a 20 kDa N-terminal signaling domain (SHH-N) and a 25 kDa C-terminal domain with no known signaling role.[85] The cleavage is catalysed by a
protease within the C-terminal domain. During the reaction, a
cholesterol molecule is added to the C-terminus of SHH-N.[86][87] Thus, the C-terminal domain acts as an
intein and a cholesterol transferase. Another
hydrophobicmoiety, a
palmitate, is added to the alpha-amine of N-terminal
cysteine of SHH-N. This modification is required for efficient signaling, resulting in a 30-fold increase in potency over the non-palmitylated form and is carried out by a member of the
membrane-bound O-acyltransferase family
Protein-cysteine N-palmitoyltransferase HHAT.[88]
Robotnikinin
A potential inhibitor of the Hedgehog signaling pathway has been found and dubbed "Robotnikinin"—after Sonic the Hedgehog's nemesis and the main antagonist of the Sonic the Hedgehog game series,
Dr. Ivo "Eggman" Robotnik.[89]
Former controversy surrounding name
The gene has been linked to a condition known as
holoprosencephaly, which can result in severe brain, skull and facial defects, causing a few clinicians and scientists to criticize the name on the grounds that it sounds too frivolous. It has been noted that mention of a mutation in a sonic hedgehog gene might not be well received in a discussion of a serious disorder with a patient or their family.[17][90][91] This controversy has largely died down, and the name is now generally seen as a humorous relic of the time before the rise of fast, cheap complete genome sequencing and standardized nomenclature.[92] The problem of the "inappropriateness" of the names of genes such as
"Mothers against decapentaplegic," "
Lunatic fringe," and "Sonic hedgehog" is largely avoided by using standardized abbreviations when speaking with patients and their families.[93]
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