From Wikipedia, the free encyclopedia
For XML tools for NeXus format used in neutron, x-ray, and muon scattering, see
Nexus (data format) .
NeXML is an exchange standard for representing phyloinformatic data.
[1] It was inspired by the widely used
Nexus file format but uses
XML to produce a more robust format for rich phylogenetic data. Advantages include syntax validation, semantic annotation, and web services.
The format is broadly supported and has libraries in many popular programming languages for
bioinformatics .
External links
References
^ Vos, Rutger A.; Balhoff, James P.; Caravas, Jason A.; Holder, Mark T.; Lapp, Hilmar; Maddison, Wayne P.; Midford, Peter E.; Priyam, Anurag; Sukumaran, Jeet (2012-07-01).
"NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata" . Systematic Biology . 61 (4): 675–689.
doi :
10.1093/sysbio/sys025 .
ISSN
1063-5157 .
PMC
3376374 .
PMID
22357728 .
Databases
Sequence databases:
GenBank ,
European Nucleotide Archive ,
DNA Data Bank of Japan and
China National GeneBank
Secondary databases:
UniProt , database of protein sequences grouping together
Swiss-Prot ,
TrEMBL and
Protein Information Resource
Other databases:
BioNumbers ,
Protein Data Bank ,
Ensembl ,
InterPro ,
KEGG , and
Gene Ontology
Specialised genomic databases:
BOLD ,
Saccharomyces Genome Database ,
FlyBase ,
VectorBase ,
WormBase ,
Rat Genome Database ,
PHI-base ,
Arabidopsis Information Resource ,
GISAID and
Zebrafish Information Network
Software Other Institutions Organizations Meetings File formats Related topics